Content

Support

Please get in touch with the PLGrid Helpdesk: https://helpdesk.plgrid.pl/ regarding any difficulties in using the cluster.

For important information and announcements, please follow this page and the messages displayed in the login message.

Access to Ares

Computing resources on Ares are assigned based on PLGrid computing grants (more information can be found here: Obliczenia w PLGrid). To perform computations on Ares you need to obtain a computing grant and also apply for Ares access service through the PLGrid portal.

If your grant is active, and you have applied for the service access, the request should be accepted in about half an hour. Please report any issues through the helpdesk.

Machine description

Available login nodes:

• ssh <login>@ares.cyfronet.pl

Note that Ares uses PLGrid accounts and grants. Make sure to request the "Ares access" access service in the PLGrid portal.

Ares is built with Infiniband EDR interconnect and nodes of the following specification:

Job submission

Ares is using Slurm resource manager, jobs should be submitted to the following partitions:

If you are unsure of how to properly configure your job on Ares please consult this guide: Job configuration

Accounts and computing grants

Ares uses a new naming scheme for CPU and GPU computing accounts, which are supplied by the -A parameter in sbatch command. Currently, accounts are named in the following manner:

Please mind that sbatch -A grantname won't work on its own. You need to add the -cpu, -cpu-bigmem, or -gpu suffix! Available computing grants, with respective account names (allocations), can be viewed using the hpc-grants command.

Resource allocated on Ares doesn't use normalization, which was used on Prometheus and previous clusters. 1 hour of CPU time equals 1 hour spent on a computing core with a proportional amount of memory (consult the table above). The billing system accounts for jobs with more memory than the proportional amount. If the job uses more memory for each allocated CPU than the proportional amount, it will be billed as it would have used more CPUs. The billed amount can be calculated by dividing the used memory by the proportional memory per core and rounding the result to the closest and larger integer. Jobs on CPU partitions are always billed in CPU hours.

The same principle was applied to GPU resources, where the GPU-hour is a billing unit, and there are proportional memory per GPU and proportional CPUs per GPU defined (consult the table above).

The cost can be expressed as a simple algorithm:

cost_cpu    = job_cpus_used * job_duration
cost_memory = ceil(job_memory_used/memory_per_cpu) * job_duration
final_cost  = max(cost_cpu, cost_memory)

and for GPUs, where a GPU has the respective amount of memory per GPU and CPUs per GPU, respectively:

cost_gpu    = job_gpus_used * job_duration
cost_cpu    = ceil(job_cpus_used/cpus_per_gpu) * job_duration
cost_memory = ceil(job_memory_used/memory_per_gpu) * job_duration
final_cost  = max(cost_gpu, cost_cpu, cost_memory)

Storage

Available storage spaces are described in the following table:

Ares is in the process of migration to new $SCRATCH space, please consult the page:

New scratch space on Ares

for more information about the current state of the cluster.

Current usage, capacity and other storage attributes can be checked by issuing the hpc-fs command.

Please note that if a storage space uses transparent compression, the data stored on physical disks is compressed on the fly.New scratch space on Ares The compression might manifest as different sizes reported by utilities like ls and du, where ls by default reports apparent file size (the amount of data in the file), and du shows actual disk usage. In most cases, the apparent file size is larger than the disk usage. The actual disk usage (as reported by du) is used for quota calculation.

System Utilities

Please use the following commands to interact with the account and storage management system:

• hpc-grants - shows available grants, resource allocations, consumed resourced
• hpc-fs - shows available storage
• hpc-jobs - shows currently pending/running jobs
• hpc-jobs-history - shows information about past jobs

Software

Applications and libraries are available through the modules system. Please note that the module structure was flattened, and module paths have changed compared to Prometheus! The list of available modules can be obtained by issuing the command:

module avail

the list is searchable by using the '/' key. The specific module can be loaded by the add command:

module add openmpi/4.1.1-gcc-11.2.0

and the environment can be purged by:

module purge

Sample job scripts

Example job scripts are available on this page: Sample scripts

More information

Ares is following Prometheus' configuration and usage patterns. Prometheus documentation can be found here: https://kdm.cyfronet.pl/portal/Prometheus:Basics